species:   Artha
pid:       MI0019225
parent:    ath-MIR5645c
paralog:   
locus:     3:14742421-14742804
matures:   ['AACCUAUUUAACGACAUGACU', 'UCAUGUUGUUAAAUAGGUUAA']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 3:14742421-14742804

2 out of bounds
6 alignments
3 proper strand
3 stranded perfect matches

                                                   ***********************                                                                                                                                                                                                                                           ***********************                                                    
CCCAUUUGAGUCAUGUUGUUAAAUAGGUUAAUAGAAUUUUUUACGACGUUAAUGUUCCGUUUAUCUGCUCUGUUAGAACAAAACAAUGUCGUUUAUUACAGAGACAAACGACGUCGUUUUAUCUGUUGAAACAAAUUUUAAACCCUAAAUCCCCAAAUCGAUUUCAUUAUCUCAAAUCCUAUAGAGGCCGAAUCGAUUUGAAUCCCAUCUGGUGAGGAGACAAACAAUGUUCCUCAGCCCAAAUCAAAUCGAAAAAAAAAAAGAAAAAACGGAAGAAGGAAGUUGAAGUAGAUGACAUCGUUUUGUUUUAAUAGAGAAAAUAAACGAGACAUUAACGCCGUAAAAUAUUUUUGAUAACCUAUUUAACGACAUGACUGAAAUGGC
.((((((.((((((((((((((((((((((..(((((.(((((((.((((((((((.(((((((...(((((((((((((((((.(((((((((((((((((...(((((....)))))..))))).................(((...(((.(((((((((((.....((((..........))))..))))))))))).........((((((((((.((.....)))))))))..))).............................)))...))).......)))))))))))).)))))))))))))))))...))))))).)))))))))).))))))).)))))...)))))))))))))))))))))).)))))).
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCUAUUUAACGACAUGACU-------- l=21 a=0 c
----------UCAUGUUGUUAAAUAGGUUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=0 c*
-----------------------------------------------------GUUCCGUUUAUCUGCUCUGUU---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 ma
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAGAGAAAAUAAACGAGACAU---------------------------------------------------- l=21 a=0 ma*

-----------------------------------------------------GUUCCGUUUAUCUGCUCUGUU---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 (ma)
---------------------------------------------------------CGUUUAUCUGCUCUGUUAGAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 
------------------------------------------------------------------------------------------------------GACAAACGACGUCGUUUUAUCUG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 

mb-01011
ax-1010011
ku-01
ss-110100111100
fn-001
